YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE11832
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRSEVKQQT VGIEIAREND SSSRPIIRVL FSVQLLSMIA VTTHHTAMPF LVKIANKSHF  60
   61 LPTTSVFMME ILKLSFCLII VLIETRSIRK TAKKLHKNIW QNWWETMKVS VPALVYAVQN 120
  121 NLYYVALANI DATTYSVTLQ LRILTTAILS VVLLSKKLSG YQWMAQGMAL IGELFLKYKL 180
  181 DNSNSRREIA GNFWLGLASV LGMCWTSAFA GNIFHGWTWI VWLVTIGNSI GGLCISLVMK 240
  241 YADNVMKTYC QSLAIGFTSI VSICLGDRLL SLYLGYGVFL VTSSVVVYSL YPATQPTTPN 300
  301 YKPLKQDITE DTDE

Type	Start	End	Confidence
Cytoplasmic	1	25	0.98
Transmembrane Helix	26	48	0.88
Non-Cytoplasmic	49	63	0.86
Transmembrane Helix	64	83	0.91
Cytoplasmic	84	108	0.81
Transmembrane Helix	109	127	0.49
Non-Cytoplasmic	128	137	0.47
Transmembrane Helix	138	154	0.55
Cytoplasmic	155	189	0.82
Transmembrane Helix	190	211	0.90
Non-Cytoplasmic	212	218	0.74
Transmembrane Helix	219	239	0.94
Cytoplasmic	240	247	0.84
Transmembrane Helix	248	266	0.72
Non-Cytoplasmic	267	271	0.49
Transmembrane Helix	272	292	0.77
Cytoplasmic	293	314	0.60