YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE11816
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLNTTASSS LNSHSYDMVE VFAMIMLPLI LIGIFGNIIS IYVYSRHHMN KNTIGFLLLS  60
   61 LSTIDLIVLI TAMPSFGTYK FPFFPGYHEI GSVHTIFSAF CLIYFYPLMC MGKMMGQYII 120
  121 VLISVERWFA VCRPLQVQIW CTQKNTIRAM TCIIAISILF NAPRFFEFKA NLITGVIGFG 180
  181 LAHISKNEWY FYLYYGIRAI IFDALIPFSI IAVTNIQVIQ QLRKSNEERK LMTTQQQKDN 240
  241 KTTTMLLVMI FMYAICHFLC TSVKFINLFS HNYVQFQFVI FKIIHHISNV LLVFYSASTF 300
  301 FIYLIFSEKY RNVLSTCVTC RNTDELTVSS RGRQNTKTTR SNSQNGYTAI KNEKT

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.96
Transmembrane Helix	21	44	0.93
Cytoplasmic	45	53	0.88
Transmembrane Helix	54	76	0.90
Non-Cytoplasmic	77	89	0.85
Transmembrane Helix	90	110	0.85
Cytoplasmic	111	164	0.77
Transmembrane Helix	165	184	0.63
Non-Cytoplasmic	185	198	0.78
Transmembrane Helix	199	219	0.92
Cytoplasmic	220	241	0.93
Transmembrane Helix	242	266	0.85
Non-Cytoplasmic	267	282	0.93
Transmembrane Helix	283	306	0.91
Cytoplasmic	307	355	0.99