YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE11718
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFPIVLFLI LVELCFSYKV LVFNPAFGAS HANFLGKISD ILIDAGNDVT MVIPIFIDGK  60
   61 KELIGSKKVK KIIRIEQDPR IAQMHREGST EEMMRKSIWK MDSDITSLFG LIGNFSSAAA 120
  121 YKTEYMFQQT ELIEQMRKEK FDLAITESLF FVGFALFDEI GIWSVINADS TLYMGYKEKW 180
  181 KINTFKKNGM IKSFLKVFAS MPETTFIWKY EVANATLADH LPNVKLITWM PQNDILADER 240
  241 LTLFITHGGL GSSVEIAYQG KPAVVIPLMS DQPRNAHMIT RHGGALQLDK TLLNKPEEII 300
  301 KAIQTVLNDV NYKHNAERLA KILEEQPHKP KDVVLKHCDF AVQFGSLDTL NSEGRLLNTF 360
  361 QFYSFDIPLA IFVIVCIILF VVYLVIKLLF RFIGRQFPLL KQKID

Type	Start	End	Confidence
Signal Peptide	1	17	0.96
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	366	0.99
Transmembrane Helix	367	390	0.88
Cytoplasmic	391	405	0.97