YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE11490
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWPPVDVRSL TAESLGRASL ILAVDLLLFV TSILNITVIA FTPDLSDVIG CYLISLSVAD  60
   61 LLTAIFVIPL SIYSTLEGNW RIGGDNSIIC KSAAYLQIAL FCSTVYTFAW ICIDRYSAMM 120
  121 KPSRYSEQSL TRCKCWIVFS WLTSMLLCCP IIVARMQVVF YPDAQLCVLD WSATSAYSVT 180
  181 LLLLVFVPTL VTVFNTGWKI WSAMRNPAAL DDSQRMLVET DPNFVLTGFL FVTFFLSWLP 240
  241 LITLKVCELI WGPFDMDLSM LTFFFVWLAV SGPCCKFLIY MFTNHQFRRS FLSYISCSMC 300
  301 CSSRSRYEYH DIGNNSFL

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.89
Transmembrane Helix	19	41	0.90
Cytoplasmic	42	48	0.84
Transmembrane Helix	49	72	0.89
Non-Cytoplasmic	73	92	0.90
Transmembrane Helix	93	113	0.93
Cytoplasmic	114	134	0.90
Transmembrane Helix	135	154	0.97
Non-Cytoplasmic	155	175	0.87
Transmembrane Helix	176	198	0.89
Cytoplasmic	199	222	0.91
Transmembrane Helix	223	242	0.95
Non-Cytoplasmic	243	259	0.87
Transmembrane Helix	260	280	0.94
Cytoplasmic	281	318	0.93