YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE11480
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQGFLIYYS RLLLDFRAFF CRALALAIFF VQFSICITQL VQKLFICVNT TFLCAERGEM  60
   61 ITGGTKILRN TFQSIKLEDN RKIFIFHKMF GKLISLLGLV ALCSAGQFSI SVEKSGSLRE 120
  121 QLIREGRYGQ ELARIQQLST GNVSFFDHFD EYYTAGVRIG TPAQHFQVAF DTTSSNLWVF 180
  181 GVECRSQNCH GGRGRRDREY NRTASSTFVA GTSSFNLPYD GGHVSGNVGK DTAQFAGFTI 240
  241 QSQDFGIGTA ATRLFGETFD GVLGLGWPAT ALNGTSTTMQ NLLPQLDQKL FTTYFTKSNM 300
  301 HNGTAGGDIM FGAIDTTHCQ SQVNYVPLAY NSFWSYSVDG FSIGTYSRTQ TETTIPDTSS 360
  361 GWTGVPNVVL AGIVKATGAT YDWNHQAYTL PCSSTATLPD MVFTIGGNSY NVRAVEYVVN 420
  421 LNLPNGQCAL SLFGTAASQS GPAWILGDNF LRSYCHVFDF GNSRIGLAKA IQNY

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.34
Transmembrane Helix	18	41	0.78
Cytoplasmic	42	89	0.51
Transmembrane Helix	90	110	0.67
Non-Cytoplasmic	111	474	0.90