YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nlp-4
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMDIFSEAQ MFRYEDFMDR WTNEKGEFDF KAYVTTDAYM ITPYVVIIHR CWESKEVPHR  60
   61 CDRKIVQPIP PLNVTVNSKT PDEKKVYNFG KVDLRFKNPA EVTSKMRSLI LFVILLVAFA 120
  121 AARPVSEEVD RVKRDYDPRT EAPRRLPADD DEVDGEDRVK RDYDPRTDAP IRVPVDPEAE 180
  181 GEDRVKRDLS FSPNTEAPQP PPKHHPVPIE SAN

Type	Start	End	Confidence
Cytoplasmic	1	104	0.55
Transmembrane Helix	105	122	0.56
Non-Cytoplasmic	123	213	0.95