YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE11422
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRGINPIYQ ALLAATFTWG VTALGASLVF IMRHQSKKLL DISLGFAAGV MTAASFWSLL  60
   61 APAIEIAEAD FEKWAFVPVA IGFAVGAGFV HLADTLLPSC VGDAGMTSLL SPPTRRSETE 120
  121 MSLMQAREDL DVAALARSVN EEHRERDRSV DMGSDKRPDV IPEEDYRQSW RRILLLILAV 180
  181 TVHNIPEGLA VGVGFGSAGK TKQATFESAF NLAIGIGLQN FPEGLAVSLP LAAFGHSKLK 240
  241 AFWYGQLSGM VEPIAALFGA AAVIFMEPVL PYALAFAAGA MIYVVVDDII PEAQRNGNGK 300
  301 LASLGCIIGF LVMMCMDVGL G

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.92
Transmembrane Helix	8	31	0.89
Cytoplasmic	32	41	0.76
Transmembrane Helix	42	61	0.95
Non-Cytoplasmic	62	73	0.76
Transmembrane Helix	74	97	0.81
Cytoplasmic	98	173	0.93
Transmembrane Helix	174	196	0.78
Non-Cytoplasmic	197	211	0.73
Transmembrane Helix	212	234	0.75
Cytoplasmic	235	241	0.85
Transmembrane Helix	242	264	0.89
Non-Cytoplasmic	265	268	0.78
Transmembrane Helix	269	290	0.84
Cytoplasmic	291	298	0.83
Transmembrane Helix	299	320	0.89
Non-Cytoplasmic	321	321	0.93