YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE11364
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.69
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLKFCDIKF LRKTFARTRH LCAGVWPVLH FTVILLSLIP VTFADGPAAP PATTEEPKST  60
   61 APPATTDVTQ TLVPSVYLPL GAGEPQQGRN ISSPSSLEVV VKCDPTPART IIGKADNSFV 120
  121 KFNRDFKKEC ELFTCSNDVY QGDGDQLEEI VNFDPALYSK NAKAPKPEKP ETNICSDKKA 180
  181 TYPEGSTPTS SILFANEGNC YAKVGSTLIT LLETPETFAQ VPRWLPANED RLNLKSLFFS 240
  241 NEKSEIVERV PFVFESKKND STAVTYQKCD TTCDKGSIVK IQMNPGEYSM MVYLNPKECS 300
  301 SFRICFDPDR FLDDSKKPSC QDDFTIDVLF KSGVVVWGKK GRASIIEMMS PYHDEDNVVG 360
  361 IEFGYGVKTS KGDLAGEFYI GNDHREFVQS DSSGYTSASS SKLAFFFPSD GCLRATAGIF 420
  421 SKKIASGKTM ANEKVTVVGK LFGESGELIT VQTPEVATTT TARPIKNIAA TTTVAPLQLI 480
  481 ADASLVDNDL QSNLEATGVY VDGKWWWWAI YLGFVLGTLL TLAIGGGICY VLRRTVYGYW 540
  541 YRGMYRRYGC DVSATTAGLT GVGFGATTTA MQTISPGKTG ATTLGSTSST TGITETTGTT 600
  601 GSTATTGTMA

Type	Start	End	Confidence
Signal Peptide	1	44	0.69
N-region	1	35
H-region	36	41
C-region	42	44
Cleavage Site	44	45
Non-Cytoplasmic	45	506	0.98
Transmembrane Helix	507	532	0.90
Cytoplasmic	533	547	0.92
Transmembrane Helix	548	570	0.71
Non-Cytoplasmic	571	610	0.74