YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pept-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.69
Transmembrane Helix	21	39	0.54
Non-Cytoplasmic	40	54	0.71
Transmembrane Helix	55	75	0.91
Cytoplasmic	76	83	0.78
Transmembrane Helix	84	107	0.86
Non-Cytoplasmic	108	116	0.74
Transmembrane Helix	117	139	0.83
Cytoplasmic	140	153	0.90
Transmembrane Helix	154	175	0.93
Non-Cytoplasmic	176	187	0.85
Transmembrane Helix	188	210	0.90
Cytoplasmic	211	268	0.97
Transmembrane Helix	269	287	0.97
Non-Cytoplasmic	288	314	0.97
Transmembrane Helix	315	335	0.94
Cytoplasmic	336	349	0.81
Transmembrane Helix	350	369	0.89
Non-Cytoplasmic	370	581	0.94
Transmembrane Helix	582	601	0.83
Cytoplasmic	602	611	0.72
Transmembrane Helix	612	631	0.91
Non-Cytoplasmic	632	642	0.63
Transmembrane Helix	643	664	0.89
Cytoplasmic	665	701	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEKSLLQKL RSYPPAVFFM LGNEFCERFS FYGMKTILFI YLITEHEFSP SKATFIYHLF  60
   61 TCIAYLTPLI GSIMADSVFG RFKVILYGSS IYVVGHVLLS LGAVPFLSYP IRSSLDFSGL 120
  121 FVIAFATGCI KPCVSAFAAD QFTEDQKDLR SQFFSFFYFA INGGSLFAII ITPILRGRVQ 180
  181 CFGNAHCFPL AFGVPGVLML LALILFLMGW SMYKKHPPSK ENVGSKVVAV IYTSLRKMVG 240
  241 GASRDKPVTH WLDHAAPEHS QKMIDSTRGL LNVAVIFCPL IFFWALFDQQ GSTWVLQARR 300
  301 LDGRVGHFSI LPEQIHAINP VCVLILVPIF EGWVYPALRK ITRVTPLRKM AVGGLLTAFS 360
  361 FAIAGVLQLK VNETMEFPPS LGRIYLQRVG NESLISDFRY KSDGRLIGDG MLPKGRTELD 420
  421 AGIYTFNTGL KNESQEIDIS TPNKGYVMAV FRLKDAVEVV KFDYKVEKTD NGATRVFVVT 480
  481 AREDADTLVY AINKKGKILS SCELKSGSYV DVIPGIISDP NVRLYWGPKN SCSGVDCPNT 540
  541 VTLNAQMGAV HVLHIHPSTT EGDFNLLVRP NSVSILWSLP QYIIITLGEV LLSVTGLEFA 600
  601 YSQAAPNMKS VLTAMWLLTV FAGNLIDMMI SGTRLIPHPA LEFFFYSTLM VIVMGVFILL 660
  661 AMQYTYVEDN DDEITITESE KKDVIALTEI ESGTATSDKK E