YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE11204
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEAILKLVL MFVMFSLTVI VGLSPLKVLH KLRHEAATAQ SSSKHKHVSL VLCLLTCFSG  60
   61 GVFLATCFLH LFPELRENLE TLDTVHNFRI DYPVGELLSC LGFFLIFFLE EVVIMIIPSF 120
  121 AHGHGHGHGH DHHHHETTPP LASKSVEASG AGGCCMADTV DEIKKKEDDL VVDETTALTK 180
  181 TTKRAISEEK EGDGHCQTHC PLTVHERRGS NECTANATHK KIVFKNRRYG RRISRNQNRF 240
  241 SSYGSTLNGD LLFGENDDEE GSECTFAPVA FAEPERCETN CEAIDEDPPI LMKSRPHAHS 300
  301 HGVRSITFVL ALGIHSIIEG LAFGVQSGND TIIALFLSLM VHKLIVAFSV GLQLFRTHAH 360
  361 QIKWVIISIF TLASMTPLGA LIGLAVTSAA DNALWKDLTI TILQGLAVGT FIYVTFFEVL 420
  421 LHERDNEHPN LLKLLVMFIG FALIGALRGF ESSHGHSHSG STEPHFHGNS SFDDYGH

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.86
Transmembrane Helix	8	29	0.94
Cytoplasmic	30	47	0.96
Transmembrane Helix	48	72	0.90
Non-Cytoplasmic	73	96	0.88
Transmembrane Helix	97	117	0.83
Cytoplasmic	118	301	0.98
Transmembrane Helix	302	323	0.91
Non-Cytoplasmic	324	331	0.83
Transmembrane Helix	332	355	0.90
Cytoplasmic	356	363	0.91
Transmembrane Helix	364	386	0.92
Non-Cytoplasmic	387	399	0.78
Transmembrane Helix	400	421	0.91
Cytoplasmic	422	430	0.89
Transmembrane Helix	431	450	0.94
Non-Cytoplasmic	451	477	0.97