YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	dhs-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGILYWILN LTVVESVFYL VVAFLLFLIG RHFIEKLQIN NLSKRAVFIT GCDSGFGRGL  60
   61 ALKCLEQGMP VFAGCLTEQG IESLSAEARK SIGNGRSLDA FLMDVTSDES VGEVAKRLEK 120
  121 KCEQYGGLHA VVNNAGITGK HIADDFLDIN EYLKVANINL WGPIRTTMAV KKLLKKARGR 180
  181 VVTVASICAR VGLPGLGPYS VSKYGVSAYC DVIRQELRPF GISVHVLEPG FFNTPLINRE 240
  241 KIDAEILEAW KHAPNEVKQE YGEKFFNDAR ESTHLFLNSV ASSQISLVVD AYFHAITSKH 300
  301 PRSRYQIGWD SILLFIPFSY LPTGLQDYIF AAAGLFLPKP ACR

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.62
Transmembrane Helix	7	30	0.84
Cytoplasmic	31	306	0.57
Transmembrane Helix	307	326	0.46
Non-Cytoplasmic	327	343	0.60