YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE11076
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHFILIFPI GDDVMGTIIQ TIYSVIVFVG IILNIYVVNK MSRLYKSDKD QFINGTGIYL  60
   61 MSMAVCDAVN LVLSCFEMLT YLLSITSSEQ AASILCKIAE FTLRCSYTYS MYCWLFMSGL 120
  121 RYLAVFSPIH YTTLWRSPWH MVIPCFIVAI ISNMYLLVAV KQENFQCILI IDEYSTLYNS 180
  181 VDVFISTLLP VSFILALDLL VLCFRPSRQQ NDPLLQIVFH RLDEDTEKRK MITTRKFMLV 240
  241 TLLAVSLSTP DGILRAIRPY IDGNVVFILF QVFKGSYLAR FTFNAFYLTL FVFDRNILSK 300
  301 VSSSRHLSVS MRRLEEEPAI VPRERSRTLS CQRPPLVHNL MRNSSCIIYK DDKDDKENNE 360
  361 TSSTLWV

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.91
Transmembrane Helix	17	38	0.93
Cytoplasmic	39	56	0.84
Transmembrane Helix	57	76	0.82
Non-Cytoplasmic	77	107	0.73
Transmembrane Helix	108	131	0.76
Cytoplasmic	132	138	0.68
Transmembrane Helix	139	159	0.91
Non-Cytoplasmic	160	182	0.80
Transmembrane Helix	183	204	0.84
Cytoplasmic	205	236	0.91
Transmembrane Helix	237	257	0.82
Non-Cytoplasmic	258	276	0.81
Transmembrane Helix	277	298	0.74
Cytoplasmic	299	367	0.90