YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE10914
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVFRLALPH ITLLVVSILY AVFGGWMLTL IKYSQQTTHQ AIMFDQTRQN FAKRLALIGN  60
   61 KEEFESIVDE LVEKTYDFYT MEDGHRWQEA AFNANPLTNF TSNLFFAATT LTSIESFVIY 120
  121 NLGKSSTYSI LIFSGYGIDA PESLIGRVFC LVYLFFGIPL YLITIADMAK FCTELMNRTY 180
  181 TEIIKYKYRV KRRYKRWKSG RIRRESMKVG QVIIAGGEDE VAEFLWTHLE HAQFVEVPFL 240
  241 LVIGILLLYI GLSSWIISWV ENWNMMDGFY FVMMSVLTIG FGDLVPRNEI FAVPILFIIL 300
  301 AGLVLTTTCI DVVGAYYIDR LHFFGRRLDD DPLSWLKEVQ QRRIEAMKKE AMRKLFETVT 360
  361 ALHHIRLTAF KQLTQNYDEH LRGKAPDPPR HLIASHATAD SVMLRWSAPI YVDEGKRYWY 420
  421 TITYKPRTPQ RRNNVVAVDF INKDRYLVTG LKSFTLYEFS VYVTTRYGQS VPIKVQEYTE 480
  481 PCTVPQSVRI DAISDETATI SWRAPKMNNG PESYVIQFVQ EPAPQFVYWC KYKVGSSTRF 540
  541 TLTDLHADTR

Type	Start	End	Confidence
Cytoplasmic	1	7	0.55
Transmembrane Helix	8	30	0.89
Non-Cytoplasmic	31	103	0.57
Transmembrane Helix	104	123	0.69
Cytoplasmic	124	143	0.48
Transmembrane Helix	144	166	0.87
Non-Cytoplasmic	167	233	0.51
Transmembrane Helix	234	259	0.83
Cytoplasmic	260	265	0.48
Transmembrane Helix	266	285	0.89
Non-Cytoplasmic	286	292	0.46
Transmembrane Helix	293	318	0.89
Cytoplasmic	319	550	0.56