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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25395408, gi|...
Protein type: Transmembrane
Type Confidence: 0.65
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFACSKQQHF QIDRLEERSV STIFAIEENF YSGSCYKQSK KQKMLLAFFI ALLIPRAHST  60
   61 TLTFSQFQEL HSKTADMTSM KVCWMLGGDI LPVDANIPEK GHKCTATVDR WSSNAKDAKE 120
  121 ACASRIPYHI DSAQYGTKTQ CTFLINLACA EDHWQIHGKC YRLHNGKYTW AQAKAICQTG 180
  181 VGDDVKSQVA IFYSEALSIY LNDMENIGAA WVNVPNLNDY FTNPNNDHGG VYIQGAAYKY 240
  241 DTRQGSIMMF KAESKHQVIC EYTPPTTMAE MFHLAKVYAQ IYPIGVYSHG AVFPTSSYVR 300
  301 ITQTDIIAYN GKFTDKYGNE VEKFDASGLE KKCASIGNIL NVKSYPVSGH ADDFNAMKSL 360
  361 LKGHQCYLTS SYKNDGFKKT DYRAKSGNNS LEGGIFEGAS SDEYCNAHSL SMSTTERLPT 420
  421 MAATGACALC AMHQIHYEYG PCPDKPDWID EVYRFERPSR VFCHYINNHE VETRADAVVR 480
  481 CESFGASLSG VDSDPEFQGL AQKLSPKYPP GNTVDITPHS RTVYFGDANK GAIRIDDHYW 540
  541 LGGISPCETD CSGGPTGVRE ASWDAGVAVN TTFLNNYNHD GHPWNLLPVT QYVSFRNDFN 600
  601 AFHIHPLDHY YTKNGSIVHY EKMFFVCGKS AHLTQSTTIK SALQQTSPAF CYFTVLLLYL 660
  661 FEQKISAFSC MIELFYLTKV YQQMFLIGAY THEGVLGNWH FVTVLFSGSL SARHTKSPAK 720
  721 SHKLGSVFVD EEFPPNDTSL GDLPIKKDYP IKWAAPQEFV SVPPVRHETD SWTVWRDPRP 780
  781 FQVFQLGVGD CWLIAALQTI ARRKTLLDQI VPKRWFTMKH GIAQIRLLIN GEWKVIKIDF 840
  841 HVPSSSASYE IFTPMVRKQA WAALIQKAFA KLGGSYAKLH GGFADIAFLQ LTGSFTSTYY 900
  901 LNKLSSDNDI WDFILSMQKS KFLVTACSTY CEEGSEEWDI FLKNQISPNH GHGYTEMGSF 960
  961 TEIRWQVPIG KNILINYDSE KCLCGNIFDY VLSTTSIHWV DLHILSRFFS CFEICHYREG1020
 1021 WKEIRFRKTL VPKNGKTEIL KLFLKTRCEL VIEVIRRKEA LRLEAEQLRN RCILFCIVYS1080
 1081 ATADNKCDKI LMITHAYDLN LELTPGTLDP GTYLISFVIL EDYDELELDW VIRR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle