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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: fer-1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVKEKLLKV KQKFKRGDSS SDVDSGPERD RDEDDSDNES RNTSKTSKSS KKSKSGKSTG  60
   61 TSEMTELSDD GGSDIELLPD DGKSFGKRKL QDTDKPCTWN VLVRIIEAKD VSTGSARVRT 120
  121 IFDGNSKMTR TVTHAIPKWR QNILYTIKNQ PLEKLAAKVL TLRLVRPTAL GESSVGEFSC 180
  181 YLSEVIHSPD RSVIAKWVAL GFPGMDDEEP DDIAYENCGF LKVTLSVYRI DESPPTLIDD 240
  241 DGKEQIWSGA HLIDYTLKIR VFSVEQLIRQ MINERKIKKK QRFYVMVQCG AHKTETTMES 300
  301 AFLDEDANIA SVKFEQEIYL PIQWPTVISE IIFSLFDKKG RGKTCIGKAT LPMKMIYEPG 360
  361 ETGYLPTFGP AFLNVFDCER VTRFSIFSRK MRGSQQDGSR FVGRLFIAID CVEYMEKANA 420
  421 QIMHLDHSPI MEAESICKNL EWYNCFCSMS GLNMINPQFA SDPVCIMMSI GSFGSTSNEF 480
  481 RSCNSSTLPA EPNWDGCKYF TMPWGNLRPV AEVNAPWEVI EHRIEMSNVL MKMTNMLDTM 540
  541 IWEVRRIGNK AIDHVSSVGM EALECLEQQI DSASKYLGRI NPVSSNALDR HILDYRKEKI 600
  601 LKLREHFEKE AFSIDYSDGE VDAKLLRMLL KIRSMTLELA EDVQMTIPPV LIKMMSHGKL 660
  661 IGFAKIPISE IFQSDDEAQS GEWCGRTRAI NIQWPTLVDQ RNRKREHVAV LHAKMWFGRT 720
  721 DQLTKWKEHV QPADIRRFME MYEVQTKGLA LKWKDEADIY DGKWEKTNEV PLENGWNAVG 780
  781 HWIVMNTRHM FVPKLGQHTV HDKAFEIQKR TEDGTWKHFK YTDCYADELK PKDLDKHAKG 840
  841 WEVGSWAQDK FRNNGDEKGW VYSTNGVFFG SGVLTDREEK VHHNFRKRCI KRPRKHEGYN 900
  901 KELEDFEHFR TTMGNENWEY SPSKKEGPYH DLEDRTDRIR RRRYVREVEN KDPDSEDPRF 960
  961 RVYEYQMQTG KWQLRCYIMW GNDLLPVVKN SSRAFVRISF AQYSKQTLLV DNSQNPIWNE1020
 1021 TVMFKSVLIA GGTRDIMKYP PVVSVEVVGE CSNNEEANLG HFETKPNVIC GNTDVRGTPQ1080
 1081 WFPLKFSNGR TRGAVLACFE LYSEEDKDLI PLEPKCKHNY KERSEIPTEF RPQFDKFHVQ1140
 1141 FLCWGVRNLK KHKLLAVRRP FVGLTIGDQE FTLQPLKDVR RDPNFPEPMI VFGEVILPSA1200
 1201 LELSPPLIIN LFDARAFNRQ PLVGSCLVSD LHKYVSHIVP KVKSDHAERW EQLDLVITEE1260
 1261 FDQIIRMVRV PTLTTDPMVP LDWWSRYYAS MSQFHRSPGY PESGMEYVRI FRRPLEQMNG1320
 1321 YNNFSDFLDT FPFVKSMKGD FDDPEEKEKA GELKCRLLIS KLKKGKPPAA INTVVDFVGP1380
 1381 TRCLVRVYII EANGLISNAR KGRVDSYVKL HCGKQNVNLK KNYRSECCDP IFGERVDMTV1440
 1441 TIPLEKDLKI TVMGKRRILS DQEIGSTTID LENRLLTKWR ATGGLSGQFT VQGELQWRDQ1500
 1501 MTPMEILKSY CYKMMLSVPK IESRQTERGE EKGITIEKIT FWFSEVLHVF ENEEIAMLNS1560
 1561 QRQKAGKENF SDGSDQQNED VSDGSWDEED LEREKEKLKW EKHRSKGKPL KKVTTEKAET1620
 1621 ADGELRKKAK MRIMGSQLQT IALFILRQMN LVPEHVESRP LFSDKGGRTQ KGELRMFVDI1680
 1681 FPMEYGAIPA PFNIAPRKPI NYQLRIAVMD VRGAIPVKRS FAEPVSDLYV KAFINGMTKG1740
 1741 HKTDTHFRVL DGTGEFNWRF LLNFDYNPWE KKVVAYTKNR FFCKPVEELV DPILVIELWD1800
 1801 KNKFRKDRLL GDIELDLLDF IEGIGSPSDV GVYSTKKRQR GVKCPKCCTR RGCLCKCCIF1860
 1861 CFETKCLCGK RKVKKKPFPK PVLFVEPEGY DDTVNIFESR NLYGWWPMLT EEYPHEEPQN1920
 1921 AKKKNDDVGK DPKWIMGLVE MDMLLLTKQE ADQEPAGKKR SEPNHSPFLE KPDRKSWANS1980
 1981 WLVSRIKPCI KYFWHYYGLQ ILLWLIIIVI LILTIFVLLH TWPTILAEII KAIF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle