YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE10154
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSANFSHLCL TDEQQRMSGT NLEYNLQRYF YPALAIFGIL GNVLNLTVLL NRSMRSRANS  60
   61 FLAVLAFADI IFLFLLFPNI LANYSFFTFN WYFRWFYLHS KVHLISLANW CSSVAHWCVI 120
  121 AVCGDRLLGI QNPLYARATW RWWKLPLVTT IIVFTCGLLT CYQHFEYFCL VRSYCRETQL 180
  181 YSRCLPVNAE KWFGHRPNPF SQRYQSFIAI CKLAHIFLMI ILPIILLLFL NLTLLWALRK 240
  241 RQKHLSIGKD FNADRRQNDV HMQKTEHRVT LTVTFIVTMF TLTNGPSALV HLVMYATHEE 300
  301 LYDLTMISST LVICGKASNF ILFCLGSKHF RLRLLKLTRK KINRKIDSIT GSLVHTTKLS 360
  361 TASSRRTSMP IQEKKRSSSC APLVAKNRAL STVETIYQPL LNGNRKGDF

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.96
Transmembrane Helix	29	50	0.91
Cytoplasmic	51	60	0.86
Transmembrane Helix	61	82	0.93
Non-Cytoplasmic	83	101	0.90
Transmembrane Helix	102	124	0.87
Cytoplasmic	125	141	0.87
Transmembrane Helix	142	162	0.93
Non-Cytoplasmic	163	213	0.95
Transmembrane Helix	214	236	0.93
Cytoplasmic	237	270	0.95
Transmembrane Helix	271	293	0.90
Non-Cytoplasmic	294	305	0.81
Transmembrane Helix	306	326	0.91
Cytoplasmic	327	409	0.96