YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE10120
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDSRLGNA RSFNRFDIIL SITHFVGFIT ICLNGYFLNT FKNGLAWPSK VKNGDNKALG  60
   61 KRGDQLHAFL MILAFIYFQG EALLAYRLYR YDAKIISKLL HTALHIIAIG LGITALTVII 120
  121 MSTNNAGWNN FTSVHSWIGI CLLSVYLVQF SFGFLTYLCP CSPGKYRARL MPIHRAVGVG 180
  181 CFIVACVQCC LGYGNILLED QPGCFSDLSC KNRIEYVGAF SVMFIILYTL LVLALIIPVP 240
  241 WRREKTPDEL K

Type	Start	End	Confidence
Cytoplasmic	1	17	0.93
Transmembrane Helix	18	38	0.94
Non-Cytoplasmic	39	65	0.97
Transmembrane Helix	66	89	0.87
Cytoplasmic	90	100	0.88
Transmembrane Helix	101	121	0.93
Non-Cytoplasmic	122	135	0.82
Transmembrane Helix	136	158	0.92
Cytoplasmic	159	175	0.86
Transmembrane Helix	176	197	0.93
Non-Cytoplasmic	198	216	0.94
Transmembrane Helix	217	239	0.89
Cytoplasmic	240	251	0.92