YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE09962
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVDSICQNS NSDGFIPFPL LRLPLKTLKS VLLEMGPIER TIFSMLSDKT KDYTRTLCIF  60
   61 KGFHLSVNVS DSLMCDFTIN GNDYYFFSFK NGEVIVRKRN QENITFTAPP FDERSWLDHF 120
  121 FHIFNPSAIY LMFQYYNRKF DEPQFQIVQE CLKGQKIGYL FIGLTSDPEM KHIVSILNAF 180
  181 LPVDNVYVNT NQNLQLNSNQ LSTLRQIMPW NFKDLTITVN IPLNDLLLLN CVSLKIRSKQ 240
  241 LTEKDLNLFL KYWIAGLKPE LEYLNFVGNG PSLNQQNVLE GIPYQLGPVE REFELYQMDT 300
  301 EFGGIDIQMA GGAKATLVFC PRNAQFTVTL HNSNPSVFMS GSPSLCKKTF KTFQFAYKFI 360
  361 KDLLLSYHTY LFLAIEAVQC LCFIHFAYPE HKTPQAALSE FFADPLQIVG TILLAGVGAF 420
  421 LLDRLFFNRK QYTIRSFCAK RYLMATAMIS LAILLPVHSI IGLYCDWTEN IMSVVIQFIA 480
  481 GYLVFNLVDQ LYELHAPVYY ELSENTKITT AQKASMVLFL VISEIFYIGL SFLDLDPLAD 540
  541 EYVASGFFYT TRFICPIINI LAIPIIWPSW LITRKN

Type	Start	End	Confidence
Cytoplasmic	1	366	0.76
Transmembrane Helix	367	387	0.78
Non-Cytoplasmic	388	405	0.89
Transmembrane Helix	406	427	0.89
Cytoplasmic	428	441	0.92
Transmembrane Helix	442	462	0.93
Non-Cytoplasmic	463	470	0.77
Transmembrane Helix	471	492	0.83
Cytoplasmic	493	513	0.84
Transmembrane Helix	514	533	0.89
Non-Cytoplasmic	534	548	0.87
Transmembrane Helix	549	571	0.89
Cytoplasmic	572	576	0.87