YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7500397
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.72
Transmembrane Helix	7	25	0.91
Non-Cytoplasmic	26	31	0.71
Transmembrane Helix	32	51	0.87
Cytoplasmic	52	127	0.91
Transmembrane Helix	128	149	0.86
Non-Cytoplasmic	150	168	0.79
Transmembrane Helix	169	191	0.87
Cytoplasmic	192	300	0.87
Transmembrane Helix	301	321	0.72
Non-Cytoplasmic	322	654	0.91
Transmembrane Helix	655	675	0.94
Cytoplasmic	676	689	0.82
Transmembrane Helix	690	716	0.78
Non-Cytoplasmic	717	736	0.89
Transmembrane Helix	737	757	0.93
Cytoplasmic	758	766	0.86
Transmembrane Helix	767	789	0.87
Non-Cytoplasmic	790	821	0.78
Transmembrane Helix	822	841	0.71
Cytoplasmic	842	885	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCAVVTWLLV FYGQVCVFLV MLYSWETYPF HTIFNFIVFE SFSVLAVISH LKTMTTDPGA  60
   61 VAKGDCTDET IERMQLINGQ QTIYKCQKCA SIKPDRAHHC SVCERCIRRM DHHCPWVNNC 120
  121 VGEGNQKFFV LFTMYIALLS MHALYWGVWQ FVLCVGAEWQ QCSSLTPPAT TLLLIFLLFE 180
  181 SILFAIFTSV MFGTQISSIC NDETTIESMR SRNANLDEDE RSRNNAWKNL QLVFGGPFSV 240
  241 RWFNPLAMPF VARPTFEYSI ETMENLLKFT NKKLKLLEMA LEISKDGGTT RPKILDKILK 300
  301 FRKVALIIAY IGAYLSAQWL FDPVNMEVTR ISEHSLMPGL VTPKFDKSGI AIQLYRRFSD 360
  361 LPKSKSQQEL IHTIFSDLGL ECFTHKWRSK VAGNPMNGEN VYGFIRGPRN DGAEAQMIVV 420
  421 QLGRSEKSRR MMSRMLAFVD YAKDQVYWAR DIVIVFVDGG EKNDSIEKAA FALDAFLLKY 480
  481 QKIEALNSKK SITVEADEIQ AQTGALIGGV VYDLSGMAVK GQHIVNIQTN GLNGQQVNLD 540
  541 VFNGITKIAD SKHHSRVAIF GTLHRHSNPY MEYSPFIVPM RALYTQAFIS IEGIHSVLGK 600
  601 YGVQGLTVGL SHDYSEKQTG QFIEEVSRML NNVLERLHQS YFMYVLADDL HFSSIAMYII 660
  661 PLTILVSPLV ISAYFEWTKI QEFQFPVVHL AFHVLGFFYY IATTYVFQTI GTTFVLQWMQ 720
  721 WPFVGIDGCD GQFTPSWSLI NSFLIFFMIP LGPYVFLKTR SIFRSSVLAI LNPISVLAFV 780
  781 AINIPGMFGQ LFPTISQDSW LAAAQSIALT AIREDVEFKV NHFFLLCCFG YPIWNMLFAC 840
  841 SMRYGPEPQG SLGIFGNGSD DDDGDDDDGP QKTNRGHSTK KNKRE