YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE09888
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.96
Transmembrane Helix	37	59	0.87
Non-Cytoplasmic	60	116	0.95
Transmembrane Helix	117	140	0.82
Cytoplasmic	141	146	0.82
Transmembrane Helix	147	167	0.90
Non-Cytoplasmic	168	172	0.83
Transmembrane Helix	173	194	0.91
Cytoplasmic	195	204	0.91
Transmembrane Helix	205	226	0.93
Non-Cytoplasmic	227	230	0.87
Transmembrane Helix	231	251	0.92
Cytoplasmic	252	314	0.98
Transmembrane Helix	315	337	0.85
Non-Cytoplasmic	338	352	0.80
Transmembrane Helix	353	374	0.86
Cytoplasmic	375	387	0.85
Transmembrane Helix	388	407	0.96
Non-Cytoplasmic	408	414	0.86
Transmembrane Helix	415	434	0.88
Cytoplasmic	435	528	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTATLSFG PNQENEVQLL PPKEEKTLDN FMKLGKYCWL ILFFSEFMLL SGAGNTLYMM  60
   61 YAGAYPKLVS CEGPDVFIKD ICKSSFDFHN PPNCTITSKY DFYSINVDYG HFCGEGAWVK 120
  121 TSISVQMVGV LIGSVTSGAV ADRYGRLKVL SVCFFMVSSL SILNTFAKDL IYFTIIRTIL 180
  181 SIFKGGLLST YGVYKMEHVP RQHRFWIATM ISWAPNYMIL SFVAYLCHDW ITYQYAIFAL 240
  241 SMPGAVVFLF VKESPRWLIQ AGRIEEARQV LKHIMEVDGN TSDHSWNEIE EMLQTEKKRQ 300
  301 EERIKKRKNY DFRHLFWNKY MASVTMILWL GMFSTSFTNY GFVFNIEKLS GSLYINALLM 360
  361 GSLRWVLNIF FGLADLKFAK LGRKHIHLIS KLTITICVFS IFVTYYFEYE EDYSLIIRVA 420
  421 TLLASATASQ VFITKSMVLM EFYPTVIRNS AVSFKSSASR IGTILGPQLF ILCPYKSLPY 480
  481 AILTGFCLFD AIAFQLRLPE TKGKPLPETM PERHKNGRTA LPTTDPQN