YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE09837
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFVLFLQFM NNIFLFEIMR FLLFLQLLKM QKSNCYSTKL IRYNIIVFII LFFAYNCLTY  60
   61 KKEDLLANPY PPAVINFNTS SRYLSSNLAS VCQLGNNIFE LASLYGLSKY LNRTPVFFIE 120
  121 NGYHERMLNK MRSIMPGLME KFVIINGSVP LSINYTKFQR VCCVHEDPWN LKRSSDKYLH 180
  181 LSGIFYQSWK YFPKVKNELA SFLNNSSQNF GNLPISTNKT HITCIHTRRG DFLGYGYHAT 240
  241 DSKFLKNSEF QNKVSKISDK NSKKNRKIVL FGDDLKFLKN KFNTAIVSTD GPEDGEYFIS 300
  301 QNSALDDLLY SKYNCDTVLI TAPHSTFGWW IGYFSKGDTV YYMDIKYSRD HIYDAGKLVE 360
  361 NDFYPTHWTP LKFASSDNFT VVESLRSN

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.67
Transmembrane Helix	7	28	0.74
Cytoplasmic	29	39	0.68
Transmembrane Helix	40	59	0.78
Non-Cytoplasmic	60	388	0.87