YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE09732
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.98
Transmembrane Helix	37	58	0.90
Non-Cytoplasmic	59	70	0.77
Transmembrane Helix	71	90	0.94
Cytoplasmic	91	111	0.88
Transmembrane Helix	112	132	0.93
Non-Cytoplasmic	133	138	0.88
Transmembrane Helix	139	158	0.92
Cytoplasmic	159	165	0.83
Transmembrane Helix	166	186	0.90
Non-Cytoplasmic	187	237	0.76
Transmembrane Helix	238	259	0.88
Cytoplasmic	260	306	0.57
Transmembrane Helix	307	329	0.77
Non-Cytoplasmic	330	335	0.46
Transmembrane Helix	336	355	0.42
Cytoplasmic	356	385	0.66
Transmembrane Helix	386	410	0.86
Non-Cytoplasmic	411	424	0.61
Transmembrane Helix	425	445	0.84
Cytoplasmic	446	525	0.65
Transmembrane Helix	526	548	0.88
Non-Cytoplasmic	549	568	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLNKKVHQN KEKNLISVTK SSLEHNANFY QRIYQKICPF IGPAAIVAFL LVYHGYLIAA  60
   61 GIHNYQKASP LIYVTLFFWL CFVINFIVGT KNFKVVYADF AGKLNDFAKR RAFVPITFKL 120
  121 AFAGALFAYT IVESLSEPTR LTGFGGYVFF VIFMVVFSNR PRKINWNIVT SALIFHYCLA 180
  181 LIVLKWPTGR WFFDQLSQLI IGLLEYAQVG AKFVFGFIAG PPNICDLAPV FIFTSLQTLI 240
  241 YFSAVVALLF YFGIIQIALK KSTWFMKVLI GTTPVESVYS WACTFLGQTE APLVIKPYLE 300
  301 KLTDSELFAV LTSGFSCTGG TVFAAYVALG ACPESILTAS ILSAPMSLAC SKLMYPEEQE 360
  361 TIIKEEDFEL DHENEKGFFD TLCSAGVALV PTVFAIGATL VVVMSLLALL DQIFFYIGDL 420
  421 IGYDGWSFQM LFGYAFFPLA YIMGITNNSN QTLLVAQLMG SKTAVNEFVA YDKLGQLQKE 480
  481 GKLDPKSVLV ATYALCGFSN FGSMGIQMEV IGGLAPGRKT VASKVMLRAL CAGAIACFMN 540
  541 ATVAGILISD PVVCNSANSN STCFRIPS