YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE09715
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTQLAILGW LAVALVVAAA ENKSAYAQAA DNFLDELAGK EVEAVPVPDE KDQNEHHEHS  60
   61 SHGSHAGHGG HEGHMMKMWF HGGFEEVILF DFWRTDSLFG MLLSCAAIFI MGATYEGVKW 120
  121 FRVFLQMTQT QAQVLANKSC VETTRSSGGT CHQSVTHSQS NKPQSEPFLI SASVARTPAT 180
  181 SPFSPQRLIQ MLLYIFQLVL AYWLMLIVMT YNTYLTAAVV LGAGFGHWLF AVLQLRNCDG 240
  241 EVTDSFQTDA CH

Type	Start	End	Confidence
Signal Peptide	1	20	0.98
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	97	0.96
Transmembrane Helix	98	118	0.83
Cytoplasmic	119	187	0.88
Transmembrane Helix	188	207	0.85
Non-Cytoplasmic	208	212	0.58
Transmembrane Helix	213	232	0.83
Cytoplasmic	233	252	0.72