YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	stdh-4
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYFSLNLDEN LLIMIIVIAY TLQFLYHLIK ISLNIFGVYI FYTPIDLKRT AGASWAVVTG  60
   61 ATDGIGRSYA LDLARRGFNI FLISRTKSKL VKTKKQILNK YSDIEVRYAI CDFTRVSYED 120
  121 YKRLLHSLNE VDIGILINNV GMCFDNPEVL HRVEGGIDTL TNVINVNILP LTAGILPQMM 180
  181 ARKSGIIVNI GSAAGSIHMA KWSVYSATKK YIEWFTSILQ KEYENEGIIC QTITPLLVST 240
  241 NMIKNPLSSI FCPNSDSFAK SSLNTIGNSS STTGYITHQI QFELIKFVPE IIIDLFVKNL 300
  301 NNQLLDYQLD KKRV

Type	Start	End	Confidence
Cytoplasmic	1	9	0.65
Transmembrane Helix	10	29	0.78
Non-Cytoplasmic	30	314	0.59