YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cup-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLENFLLGI PIVTRYWFLA STIIPLLGRF GFINVQWMFL QWDLVVNKFQ FWRPLTALIY  60
   61 YPVTPQTGFH WLMMCYFLYN YSKALESETY RGRSADYLFM LIFNWFFCSG LCMALDIYFL 120
  121 LEPMVISVLY VWCQVNKDTI VSFWFGMRFP ARYLPWVLWG FNAVLRGGGT NELVGILVGH 180
  181 AYFFVALKYP DEYGVDLIST PEFLHRLIPD EDGGIHGQDG NIRGARQQPR GHQWPGGVGA 240
  241 RLGGN

Type	Start	End	Confidence
Cytoplasmic	1	15	0.85
Transmembrane Helix	16	33	0.96
Non-Cytoplasmic	34	57	0.84
Transmembrane Helix	58	80	0.87
Cytoplasmic	81	96	0.92
Transmembrane Helix	97	120	0.89
Non-Cytoplasmic	121	162	0.69
Transmembrane Helix	163	178	0.56
Cytoplasmic	179	245	0.73