YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	crls-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVTSMFRGI ACRCELQLLL TPRRMLRNFS SLEQKQSPKI ESLPPEERGK YKVATIPNAI  60
   61 CTARIAATPL IGYLVVQHNF TPAFVLFTVA GATDLLDGFI ARNVPGQKSL LGSVLDPVAD 120
  121 KLLISTMFIT MTYAGLIPLP LTSVVILRDI CLIGGGFYKR YQVMSPPYSL SRFFNPQVSS 180
  181 MQVVPTMMSK INTVLQITLV ALSLSSPVFD FSTGANDVIV GLGCITGFTT IYSGLQYASG 240
  241 KAIKKI

Type	Start	End	Confidence
Cytoplasmic	1	59	0.90
Transmembrane Helix	60	92	0.53
Non-Cytoplasmic	93	121	0.63
Transmembrane Helix	122	152	0.62
Cytoplasmic	153	190	0.70
Transmembrane Helix	191	209	0.69
Non-Cytoplasmic	210	217	0.69
Transmembrane Helix	218	238	0.87
Cytoplasmic	239	246	0.87