YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE09606
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.99
Transmembrane Helix	30	52	0.91
Non-Cytoplasmic	53	62	0.75
Transmembrane Helix	63	83	0.94
Cytoplasmic	84	95	0.84
Transmembrane Helix	96	117	0.86
Non-Cytoplasmic	118	160	0.95
Transmembrane Helix	161	183	0.86
Cytoplasmic	184	192	0.78
Transmembrane Helix	193	212	0.97
Non-Cytoplasmic	213	232	0.84
Transmembrane Helix	233	254	0.90
Cytoplasmic	255	268	0.85
Transmembrane Helix	269	293	0.85
Non-Cytoplasmic	294	313	0.92
Transmembrane Helix	314	334	0.66
Cytoplasmic	335	364	0.66
Transmembrane Helix	365	384	0.89
Non-Cytoplasmic	385	391	0.66
Transmembrane Helix	392	411	0.92
Cytoplasmic	412	447	0.93
Transmembrane Helix	448	468	0.93
Non-Cytoplasmic	469	475	0.73
Transmembrane Helix	476	498	0.92
Cytoplasmic	499	509	0.80
Transmembrane Helix	510	530	0.92
Non-Cytoplasmic	531	535	0.78
Transmembrane Helix	536	555	0.93
Cytoplasmic	556	583	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVHQIADVL FRKKTFDGGS HLESQMKRCL TILDVMFIAI GHMIGAGIYV LTGSVVRNQA  60
   61 GPAIILSFIF SGFAALLSAF SYAEFGARFP RAGSAYTYSY VGMGEIWAFI VGWTVPLEYM 120
  121 IGNAAVARSW SAYFDNLVSK SVSNWTLDTV GRLSDGKGFF ALYPDFLAFF LLFLVAVAVA 180
  181 MGSKFSANVN TSFVFLNLAV LAFVIICGLT YADFSLWSGT YQDGRSKFFP YGIQGAISGA 240
  241 STCFFAFIGF EALATAGEEA KNPHRTIPLA TFTSLAIISV IYVLMGASLT LMIPYDLVDP 300
  301 DAAFAAAFEM KGATVAKIIM SVGALAGMLN NLVTGSFALP RAVYAMADDG LIFGWFGVIN 360
  361 SKTKTPLNAT IVFTIINAIL ALVFDLQALV DFLSIGTLLA YSMVSICVII LRHQSHLVDG 420
  421 SATDYDNGGC LKSWVPFQGV WENFSEGISI RVAVAGLIFG YICLAIPFRT GIFSNAGGII 480
  481 LLTVGAAFSL LSFVFILGHE QNKSTSTYKV PLVPFIPCLG LLINVFMMVY LNSMTWIRLF 540
  541 VWLAIGIVIY ICYGIRHSKE GQKLSKIDVH NEIMSRTSDT KVH