YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mrp-4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	42	0.88
Transmembrane Helix	43	64	0.91
Cytoplasmic	65	79	0.86
Transmembrane Helix	80	99	0.94
Non-Cytoplasmic	100	111	0.75
Transmembrane Helix	112	132	0.91
Cytoplasmic	133	140	0.68
Transmembrane Helix	141	162	0.86
Non-Cytoplasmic	163	179	0.86
Transmembrane Helix	180	199	0.87
Cytoplasmic	200	377	0.79
Transmembrane Helix	378	403	0.82
Non-Cytoplasmic	404	469	0.54
Transmembrane Helix	470	504	0.75
Cytoplasmic	505	1001	0.76
Transmembrane Helix	1002	1025	0.89
Non-Cytoplasmic	1026	1058	0.81
Transmembrane Helix	1059	1083	0.81
Cytoplasmic	1084	1124	0.76
Transmembrane Helix	1125	1150	0.66
Non-Cytoplasmic	1151	1153	0.51
Transmembrane Helix	1154	1175	0.82
Cytoplasmic	1176	1238	0.89
Transmembrane Helix	1239	1260	0.81
Non-Cytoplasmic	1261	1573	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPNLQAKLK GIDAFCGERY WDPAVWNAST VPILSQCYQH TTLVWFPTAI VFLLAPILTA  60
   61 QIFYRRPNPI PWTRRIQLKI GLACILIADS LSLFTVAIYE TLFQGFPYAV DFVYPLTLCL 120
  121 AMVVLTALIV SCRNYGIVTS GGLFISWLVF TISAIPELLY WIQQIVNPAE AWNWIDYPRC 180
  181 IAFFIWFFCC AFETYLHCYA DASPEGYKYL SAARNPSPET TSSFLNRITM WWFNSLCSLG 240
  241 VKKPLEVSDL YSLNEADTSN LLVPKWYNLW DKQSKKFEET AARRRIGSNA SRTNRRRTSS 300
  301 NDTTPLLNDQ STDDYGSVPA GQSTQKMPSI IWTLFLMFKW DVITAMFVKL LSDVLLFCNP 360
  361 LLLKSLIRFT EELERPMWQG VVLAFTMFFS AELSSILLSH YFYLMYRVGT RVQTCLTAAV 420
  421 YRKTLRLSNA ARREKTVGEI VNLMAIDVDR FQQITPQTMQ YWSNPFQIGL ALFLLFQQLG 480
  481 VSVFSGVAVM VLLFPINFVI TMIIRKWQIA QMYYKDERTK MVNEVLNGIK VIKLYAWEPP 540
  541 MEQVIEDLRE QELGLIKKAA FLRTFSDMLN TASPFLVALS TFATFIYIDP KNVLTPEIAF 600
  601 VSLTLFNQLR SPMSQVAELI TQTVQVVVSN RRLKEFLVSE ELNVEAIDHR ARDNNDVICL 660
  661 KEACLSWESA EHQPVPTLTN ISFSVNRGQL VTIVGRVGAG KSSMLQALMG EMEKLSGSIS 720
  721 MHGRLCYVPQ QPWMQNNTLR QNITFGKQFD EYFYSRVLDA CALYRDLQIL PLGDNTEIGE 780
  781 KGINLSGGQK ARISLARAVY QNHDIYLLDD PMSAVDAHVG SQLFGSVIGP EGMLRNKTRI 840
  841 LVTNELSFLE KSDLIIVMNE GKIEYSGKYD DLMQQGAFEQ LLIECEKEER ERREAEASAD 900
  901 EDDENSEPGG IMIGGDSDFE YDDDVMASPI IDHVLGTSHM STVSGIINRR RISTSTHKQR 960
  961 RRLSTTKSHT HSITSASTQT RQLTGTERVE TGRVKMDTYY KYFGAMGMSI AVLFVLGMTT1020
 1021 STIFSMGRNL WLTDWSNDNA ARSGSNTTGQ PIAIRLGVYA GLGFSEIILL FIGMLSLLYG1080
 1081 GVSASRNLHA PLMRNLFRVP MAFYDTTPFG RILNRIGKDI ETVDVLLPFN VQFFAQCLLQ1140
 1141 VVSTLIIIMI STPVFGIVII PLSVMYLMVM RYYIATSRQL KRLESITRSP IYSHLSESIQ1200
 1201 GSATIRAYHL VDRFCKLSET KVDSHVQCRY LNYVANRWLS VRLEFIGNCI VLFSALFAAL1260
 1261 TRTTTTSGVI GLSVSYALNI TTVLNFAVRQ ITKLETNIVS VERVKEYAET ETEAEWKSEP1320
 1321 GKEPPQNWPS EGRIVMNNYS ARYRPGLNLV VKQLNVEIKP HEKVGIVGRT GAGKSSVTLS1380
 1381 LFRIIEAAEG QIVVDGINLA EIGLHDLRSN LTIIPQDPVL FSGTLRFNLD PFNHYSDGDI1440
 1441 WKTLEMANLK EFATAHNEQL NYIITEGGDN ISVGQRQLVC LARALLRKTR VLILDEATAA1500
 1501 VDVSTDALIQ KTIREEFANA TVLTIAHRLN TIMDYDRIIV LNDGKVGEFD SPANLLSNRN1560
 1561 SEFYSMAKRA GLI