YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE09545
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	24	0.99
Transmembrane Helix	25	47	0.88
Non-Cytoplasmic	48	120	0.96
Transmembrane Helix	121	142	0.91
Cytoplasmic	143	151	0.81
Transmembrane Helix	152	174	0.92
Non-Cytoplasmic	175	179	0.87
Transmembrane Helix	180	202	0.83
Cytoplasmic	203	211	0.81
Transmembrane Helix	212	233	0.84
Non-Cytoplasmic	234	243	0.68
Transmembrane Helix	244	264	0.92
Cytoplasmic	265	307	0.98
Transmembrane Helix	308	330	0.92
Non-Cytoplasmic	331	345	0.87
Transmembrane Helix	346	367	0.85
Cytoplasmic	368	383	0.86
Transmembrane Helix	384	403	0.85
Non-Cytoplasmic	404	408	0.76
Transmembrane Helix	409	431	0.90
Cytoplasmic	432	440	0.65
Transmembrane Helix	441	460	0.90
Non-Cytoplasmic	461	477	0.73
Transmembrane Helix	478	499	0.93
Cytoplasmic	500	530	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELCTDDAFP EKQHHPFLHI RSRRLHVVLM LMYAFFCMCQ MTAHIGLSLS CMCNSTAVAL  60
   61 MNTNNATLVE GTESTILMSI LENKTSESQE LGGGDDGESC TKLEGKVIKD YGGTFIWSVS 120
  121 WQGYIVSAAF LGGFIFSYPA GVLVDRFSAR HILSVAILML TIASLLMPVL SIYIGEKGAF 180
  181 AGRFVMGISE TMLIPSINSM VTKWIPINEK SLAASVFTAG NQLSGMFGNI LVAELCASSF 240
  241 GWSSIFYSAS LFGISWLVLW HLTVRNSPHN TRWIHKRELD YLANNIPPKH PSSVVKKTPW 300
  301 RDMLTSKVFW SLMFNSVMGN MMIALIFVYI PVYFKDVLML DVQSNGFYSA IPHISNLIAK 360
  361 LIWGYLMDKM RHKKILSPSA TVKLSQFASM MGISVSCFFL RYMNCATPFY ALVLLSSVSA 420
  421 FFGLSISGFY TSLLSIAPSH IGTLTSLATV IGFVGRMFTP LMISYYKTVG TAEEWGHVLL 480
  481 IYVFASATGG IIFLLFGSGD VQNWDYSKRH NTARPNALVA PKSDKDLEDF