YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE09533
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPNSTPPPT FFGRIVFHLT SDDVFRTAIF AFIASFTVIA AVASVTGSFL VGLLASVIVL  60
   61 LVAYAVGESC EFINNQILMP AAFLGCAVAV NLVYTVAHEG ELWEYFSRYF LFLSVFHFSE 120
  121 FVFTALTNRR TLGPDSFLLK HSFGYWLAAS IGWIEFLIEA NFYPEIKMYS VLWIGTFGCI 180
  181 IGEIVRKVGM VHAGLAFTHL MARTKRSGHT LINTGIYAYM RHPGYFGWFI WAVSTQIVLC 240
  241 NPISFVIYTF VTWRFFANRI EIEEKDLISF FGDDYAEYQR KTWSGVPFAR GYQKP

Type	Start	End	Confidence
Cytoplasmic	1	23	0.81
Transmembrane Helix	24	43	0.82
Non-Cytoplasmic	44	48	0.50
Transmembrane Helix	49	67	0.89
Cytoplasmic	68	76	0.66
Transmembrane Helix	77	98	0.92
Non-Cytoplasmic	99	105	0.74
Transmembrane Helix	106	127	0.88
Cytoplasmic	128	136	0.71
Transmembrane Helix	137	158	0.82
Non-Cytoplasmic	159	168	0.55
Transmembrane Helix	169	190	0.78
Cytoplasmic	191	206	0.58
Transmembrane Helix	207	221	0.50
Non-Cytoplasmic	222	227	0.59
Transmembrane Helix	228	252	0.85
Cytoplasmic	253	295	0.83