YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE09432
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIAVILESI QGSSSFEWIR TNLRHLLPIF CFIGILGNSM ALILIRTNFW LRRLTSNIYL  60
   61 CTLSVSSCFF LLTVIISWAD TYMGLPLYSE SELGCKFFSF LAHFSDFICV WMISLISCDR 120
  121 MIVLYRPRIR KWVCTKKFSR NMTIGFVLSS VVLYSWLFLL AGLQIYRLKD GTENTFCGLS 180
  181 QDVNLFGFQV DQHYFMFTLM DTALCTLLPA ILIIIVNSFS TYRYRQCMKI YSSGVLRVRF 240
  241 VRAPTTQQQQ QQLNNDTIQF EETTVKKYLL STDNTHSNLP TSSTQSRNCG KLRSSDLQLS 300
  301 RTLIIVTSTF VLLNVPSYAM RILQSIISSA GPLFNFVYYV TLLIYYLHHA VLFYMYIFWS 360
  361 PQMKKQLKPT AMRLLECYCL KTVPDFGHRS TSTQGKELG

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.96
Transmembrane Helix	25	45	0.95
Cytoplasmic	46	57	0.78
Transmembrane Helix	58	79	0.94
Non-Cytoplasmic	80	99	0.94
Transmembrane Helix	100	123	0.86
Cytoplasmic	124	141	0.90
Transmembrane Helix	142	163	0.88
Non-Cytoplasmic	164	196	0.92
Transmembrane Helix	197	219	0.89
Cytoplasmic	220	300	0.97
Transmembrane Helix	301	320	0.91
Non-Cytoplasmic	321	335	0.85
Transmembrane Helix	336	358	0.89
Cytoplasmic	359	399	0.96