YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	fat-7
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVKTRASIA KKIEKDGLDS QYLFMDPNEV LQVQEESKKI PYKMEIVWRN VALFAALHVA  60
   61 AAIGLYELVF HAKWQTAVFS FALYVFSGFG ITAGAHRLWS HKSYKATTPM RIFLMLLNNI 120
  121 ALQNDIIEWA RDHRCHHKWT DTDADPHNTT RGFFFTHMGW LLVRKHPQVK EHGGKLDLSD 180
  181 LFSDPVLVFQ RKHYFPLVIL FCFILPTIIP VYFWKETAFI AFYVAGTFRY CFTLHATWCI 240
  241 NSAAHYFGWK PYDTSVSAVE NVFTTVVAVG EGGHNFHHTF PQDYRASEYS LIYNWTRVLI 300
  301 DTAAVLGLVY DRKTIADEFI SRQVANHGSE ESRKKSIM

Type	Start	End	Confidence
Cytoplasmic	1	45	0.99
Transmembrane Helix	46	69	0.88
Non-Cytoplasmic	70	76	0.80
Transmembrane Helix	77	99	0.88
Cytoplasmic	100	192	0.95
Transmembrane Helix	193	214	0.90
Non-Cytoplasmic	215	218	0.87
Transmembrane Helix	219	240	0.76
Cytoplasmic	241	338	0.83