YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-38
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.81
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLLALLFTL YANVSSFNFL VFCPLFAHSH SKFFATIADS LTDAGHNVAF FTPIIVEKYR  60
   61 NFNYTKSTKD VVYMEPSKKL KEYGRQMSTG DFVRYWTEDS TATEIITVVR IFQKMYNEQG 120
  121 TVMKDNIEIL NDLKKRKFDV IIFEAFIFSA YPLMDYLEIP TFIPSLSVAH DTALAVEIGE 180
  181 PVMPSVVSDC LSPFGDKLSI TERAFNAFMV PYFDFMIGYP THRSFKPPYN PIDIRSIVPE 240
  241 ASFVFLNSNP FVDFPRPTLT KTIQIGGISV DSNELRSQKL DETWSEILKL REKTMLVSFG 300
  301 SMLYSKDMPF KNKIALKNAM EKFKNVTFIW KYEDDSSDEF AKGIENIHFA KWVPQTALLA 360
  361 DSRLSAFLTH AGLGSITELS YLGKPAILCP QLFDQMRNTK MLVRHNGSIE LSKYDLGKSE 420
  421 KIIEAFQAIL FDSSYAKNAQ KLAEQLENQP IKPKEMMVKH AEYAARFGRL PSLDPYSRKM 480
  481 SFVEYFLLDV AAICVFILTF VVFVVTKLVQ SLFDIFLIKR KTE

Type	Start	End	Confidence
Signal Peptide	1	16	0.83
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	484	0.94
Transmembrane Helix	485	509	0.86
Cytoplasmic	510	523	0.88