YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	tag-123
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	292	0.99
Transmembrane Helix	293	315	0.92
Cytoplasmic	316	356	0.95
Transmembrane Helix	357	381	0.89
Non-Cytoplasmic	382	390	0.77
Transmembrane Helix	391	411	0.93
Cytoplasmic	412	423	0.83
Transmembrane Helix	424	444	0.90
Non-Cytoplasmic	445	460	0.75
Transmembrane Helix	461	485	0.87
Cytoplasmic	486	515	0.93
Transmembrane Helix	516	535	0.90
Non-Cytoplasmic	536	549	0.68
Transmembrane Helix	550	571	0.93
Cytoplasmic	572	579	0.84
Transmembrane Helix	580	602	0.88
Non-Cytoplasmic	603	620	0.84
Transmembrane Helix	621	645	0.87
Cytoplasmic	646	655	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKTTRMLTK LLLVSFLASA SAFYLPGLAP VNFCEVEKAN CPSNISLYVN HLDSDRSVIP  60
   61 YEYHSFDFCT VNEDESPVEN LGQVLFGERI RPSPYKVAFL QEEKCRLVCD TKKYARGSAD 120
  121 DLAKLRLLQR AMTLNYQHHW IVDNMPVTFC FKNLQNMDVC TTGFPVGCFV DEQGYQHDAC 180
  181 VLNQKYKTPN NFYIFNHVDI EIYYRDMTND GNFLEHKVGG RIIRIDVKPR SIKHSSSSSL 240
  241 DCSDSAEPIA IDAKSESAEI TYSYSIKWTK TDIKWSSRWD YILQSMPHTN IQWFSIMNSL 300
  301 VIVLFLTGMV GMIIMRTLHR DIDRYNRLDT EEDAQEEFGW KLVHGDVFRT PRYPMLLSVF 360
  361 IGAGCQTLLM VSVTLVFACL GFLSPANRGS LITFALFFYV LFGIVAGYIS ARLYKTFEGI 420
  421 HWKTNLVMTA FLVPGILFTI FFFSNTLLWT KGSSAAVPFG TLLVLLVLWI FISVPMTFVG 480
  481 AYFGFKKRGI EAPVRTNKIP RQVPEQTFYT KPLPGMLMGG ILPFGCIFIQ LFFILNSIWA 540
  541 HQTYYMFGFL FLVYLILIIT CSEATILLAY FHLCAEDYHW WWRSFMTSGF TAIYLFIYCI 600
  601 HFFNTKLTIS GTISTILYFS YTSIFVFMFF LMTGTIGFLA TYYFVRKIYG SVKVD