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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: slo-2
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDDTNNRTD RCTMKHRERR VDSCHSLPSD YRIPNKHVAR MQYGEKKNIK HKLQQWFIEN  60
   61 PSISARIRSC NVLIKLLTCI LYCIRVVNDE RSYPDDFPFS EEEAGKQDVT LYKYLLWVDF 120
  121 DFKIWFLQTM FACISMVYTI LVFYLSYSGS VVRLLINIHF LLELITSFPF IISIFIPSLT 180
  181 YLYVPVFLNC WLAKGALQAM MNDLNRKSFI SSSALFRQLL LLFSVLACLI FTGMCSIEHL 240
  241 QRARGKRIDL FTSFYFVMVT FSTVGYGDWY PDYWASQLCV VILICVALGL IPKQLDELGQ 300
  301 TWSERQKSGT DFSSWNGVES HVVVTITTLE VEFIRDFLEE FYAHPENQRI QIVLLSPAEL 360
  361 DNQTRMLLKI PLWNNRVHYV RGSSLRDEDL ERANVATSKA CFILSARHVN RKVATDEHTI 420
  421 LRSWAIKDFA PNVKQYVQIF RAETKMHIEH AEVLICEDEF KYALLANNCI CPGISTFITL 480
  481 LMHTSRGEEG QKSTEPWHKV YGFHSGNEMY QIKVQDSKFF CEYVGKSFSS TSFHAHKEYG 540
  541 IGLIAVSPDG DTSRMKLNPG SSHIIQPTDT VYYMGLTNEE SLTDFRKGIR SQQKRANVAS 600
  601 TIANIGTVAV DVPRSDKTEL VGRKKKKRKE KAADEIHLIE VGEHVQSSRR PSIAMVTEGK 660
  661 IDSSSDSDQE EICDKCRGPC IQHKLQRTYP QVRTYIGTSN TVCHMMKERR SLCCLKLDEK 720
  721 CAHKSATSAH EYQWRNRPII LAADRTSSGM YNLVIPLRAY YRPVHDLHPI IILLELEEQD 780
  781 SLNDAFLDAI SYFPDVYWMK GKVGNLDCLL RAGVSSAEHV VVVKETAVMA EEHTADCNTI 840
  841 ITVQKIHRMF PRLRMITELT HATNMRFVQF NPHNAYSLAQ SRFEKKERKR GSHMPFMFRL 900
  901 PFAQGGVFSA NMLDRLLYQA IIKPFVVDLV RLLLGIDQHS DGGYLTSFVI TSDDLWIRNY 960
  961 GRLYQKLCSS VADIPIGIFR TKKMDTKTVS LDLQEQCKDF ENTEMGRNKD MYDHVKNRMR1020
 1021 LLNIKDTHTF NWKYASRCRS TVLEGSDEKS QISYVIINPA QDLELESGDI VYVIRSPIRK1080
 1081 DATNARINPR RGLRRSKNVS ETIDSTNQVP TIVIDENNL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle