YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-44
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.56
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTFWYALLL IIVYYSQTIN GIERPKKVLV FMPISGHSHL KFMGTIANIL QDEGYNVTLL  60
   61 LPILDEGLRD TTPLVRKIKN RILVEQSEEL IEANAQFRAG GGRENTWVMN SGIIGFLKLG 120
  121 TKVANICKAS CKNVFQNEDL INYLRDQRFD VAISEPLYTC GFALFDHLGI ETTISTDSHL 180
  181 GLEVSKIAHG ASISTSYLPA VFSSGSERMT LIGRAKNYVE SYFNYYFNSK IYENELAGIE 240
  241 GIYKNGKGWR ELSRKNAYMF VNSNPQMDIP SPRTSKFIEI GGISSGPVKQ ERLPEEYDRV 300
  301 LSLRKKNVLI SFGTNAKSMF MSDDMKESLI KTFESMPDTT FIWKYENTTV DIVKQYNKRI 360
  361 NNVMLTDWMP QTALLADPRL TLFVTHGGLG STNEVAFSGK PSIMVPVFGD QTRNARMLER 420
  421 HEVALVLTKY DLTNFKKVRG TIRKMLNDKS YSMKAEKLAQ MLRNQPESPK EIFIKYFNFV 480
  481 ARFGKPHGLD SYAAEMSFIE FYYIDFMAIL SIFSVALYMI VSKVLRASHN LTNLVSIKFK 540
  541 FD

Type	Start	End	Confidence
Signal Peptide	1	18	0.60
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	500	0.97
Transmembrane Helix	501	521	0.86
Cytoplasmic	522	542	0.84