YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	fut-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNVKGLFSY MTKTKSFYIS IIVIIFIIFI VNRMGPRNYN YKQIGTEINC VKHKVDEQRY  60
   61 LLFPMITILY KYGLGNQLFE VFSLLGSAQT LNRTAIFNAD DDILQSKLDL LQKQVPQVAA 120
  121 RIISIPIEIA ESTRYLFLPA CCHYQFPSLF SCERSKFLVI DGQYFQSFKY FSAIDSLIRK 180
  181 LLKPPIDEEI ILKKMIGRKD ELRFKNCVHI RRGDYVNDFD HAETSSYFTI RAIDYVHTLH 240
  241 PGLVYLISDD PKWVRKQIAE HLDYHDDVKI METPINAAIR DLYFSQAHCD SVLITAPSST 300
  301 FGWWIGYMSK NQSNVYYRDI QETDDMVKYK MVEEDFFPPT WKKLGMSRNG SIISK

Type	Start	End	Confidence
Cytoplasmic	1	15	0.78
Transmembrane Helix	16	35	0.90
Non-Cytoplasmic	36	355	0.86