YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	acr-11
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.49
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFNLINSIL SLVIIHSNLC DGSVAETKLF TDLLKGYNPL ERPVQNSSQP LEVKIKLFLQ  60
   61 QILDVDEKNQ IVSVNAWLSY TWFDHKLQWE PKKYGGIQDI RFPGSSDHIW KPDVLLYNSA 120
  121 AEDFDSTFKS NLLTYHTGTV VWIPPGVLKF VCQLDVTWFP FDDQVCEMKF GSWTFHGYAI 180
  181 DLQIDDDTNG TQSMDLSTYL VNGEWQVIST NAKRVVSYYK CCPEPYPTVN YYLHIRRRTL 240
  241 YYGFNLIIPS LLISLMAILG FMFPPDAGEK ITLEVTILLA IVFFLSMVSE MTPPTSEAVP 300
  301 LIGVFFSCCM LVVSASVVFT IVVLNLHFRS ADSHEMNPLV RRVLLEFLPW LLFMSRPGYK 360
  361 FVKANVIDST DKMPKKPKNP LDCNLPSNHA GYEAQILLLH SVHTELRRVV AFYNKEEHDE 420
  421 RIQTDWRFAA MVVDRACLLL FTVFIVISIL AIMMSAPHII A

Type	Start	End	Confidence
Signal Peptide	1	22	0.48
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	240	0.71
Transmembrane Helix	241	263	0.93
Cytoplasmic	264	270	0.65
Transmembrane Helix	271	292	0.84
Non-Cytoplasmic	293	300	0.62
Transmembrane Helix	301	324	0.93
Cytoplasmic	325	435	0.86
Transmembrane Helix	436	459	0.88
Non-Cytoplasmic	460	461	0.82