YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nhx-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.91
Transmembrane Helix	19	39	0.91
Cytoplasmic	40	47	0.82
Transmembrane Helix	48	67	0.88
Non-Cytoplasmic	68	79	0.67
Transmembrane Helix	80	98	0.90
Cytoplasmic	99	108	0.77
Transmembrane Helix	109	131	0.90
Non-Cytoplasmic	132	142	0.77
Transmembrane Helix	143	165	0.87
Cytoplasmic	166	172	0.86
Transmembrane Helix	173	196	0.81
Non-Cytoplasmic	197	214	0.85
Transmembrane Helix	215	236	0.93
Cytoplasmic	237	245	0.72
Transmembrane Helix	246	264	0.87
Non-Cytoplasmic	265	268	0.73
Transmembrane Helix	269	288	0.88
Cytoplasmic	289	302	0.87
Transmembrane Helix	303	325	0.82
Non-Cytoplasmic	326	332	0.81
Transmembrane Helix	333	357	0.89
Cytoplasmic	358	370	0.92
Transmembrane Helix	371	394	0.79
Non-Cytoplasmic	395	399	0.74
Transmembrane Helix	400	423	0.79
Cytoplasmic	424	651	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVRDYGLAE LFHWNWDHIH KVYVITTWLL VASLAKILFN LMKPLSKWLP DSSLLIIVGL  60
   61 GLGYFLNQTT LSGVHLDSHA FFLYLLPPII FDAGYFMPNR ALFKNFDSVL VFSVLGTLWN 120
  121 TFAIGGSLLI MSKYQLFTMP FTTFEILVFS ALISAVDPVA VIAIFEEIHV NEFLFINVFG 180
  181 EALFNDGVTV VLYQMFKSFA LIGSENLSPW DYATGGLSFF VVALGGAAIG IIFAIATSLA 240
  241 TKYTQGIKIL APVFIFLLPY MAYLTAEMVS LSSIIAIAVC GMLMKQYIKG NITEAATNSV 300
  301 KYFTKMLAQC SETVIFMFLG LSTLTSEHHV DFIFIGATLV FCLIYRAIGI IVQCFILNKF 360
  361 RAKKFEVVDQ FILSYGGLRG AIAYGLVVSI PASIQAKPMF ITTTICVIYF TVFLQGITIR 420
  421 PLVNCLNVKK KEHREATMVE SVYNKYLDYM MSGVEDIAGQ RGHYSFIENF ERFNAKVIKP 480
  481 VLMRHEKRQS FDATSIIRAY EKITLEDAIK LTKVKSTLQN KRLEKVKSEV RVAPEQTTVT 540
  541 PKDVQLARFM QSGENIDQLY TLFSDLLDKK LNELKVQADK VDKANDDDIQ DDYMAEMGSH 600
  601 SNLGFMHHSA DQLDSDSVFQ RRGRRLSTGD LKGHCGTSRK PKHSMFELRH V