YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE08904
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQWKVMILI CLYGAVKEFR PTEPYMYEYQ HTVLNISEHT LNNVLLYKPI LIIEALSYFA  60
   61 CWMIFVFGRS VWCMQLLELF YGWATATEIA YFAYIYVKVP KEDYKSATAY TRAALLVGRF 120
  121 LAYTLAQLLI GLNWADYMTL NIINLVSMTF AVFLAAILPH VPWRNAYQKK LEDKKSVTDL 180
  181 ESLVSEAKYS DYLKLFFVEL HQNLYTIYKN PLVLKWSIWS ALSSCIFYQI INYTQTLWGT 240
  241 LPEKENKYNG IPEALVPLLG IPADLITRQM NVNWNRWGDA LISVGSLLQA GLLFWMSQSH 300
  301 EIIILYICYI IYRVIYQLTT TIAQSTLALT LDSRLFGLLF GINTFVALAL QSILTAIVID 360
  361 AEKLAIRAQV DFHLNKNILF GSFSVCEFGR AMGNAGKGKR PTEYNVEEDE FAPRHQREVD 420
  421 PEQEAQRQQV LGDRQRRMDR VAEPHWVHRM ELEPTVSHWL DRKPLMYDFQ FPCILQICLV 480
  481 PNAKKKLIDF EGICYILYGH LRCPTEECFF KDFQPFEISL SRRNVKINRD RLESK

Type	Start	End	Confidence
Cytoplasmic	1	49	0.91
Transmembrane Helix	50	68	0.90
Non-Cytoplasmic	69	78	0.69
Transmembrane Helix	79	97	0.90
Cytoplasmic	98	108	0.87
Transmembrane Helix	109	131	0.81
Non-Cytoplasmic	132	141	0.65
Transmembrane Helix	142	161	0.94
Cytoplasmic	162	211	0.97
Transmembrane Helix	212	231	0.75
Non-Cytoplasmic	232	276	0.73
Transmembrane Helix	277	296	0.84
Cytoplasmic	297	301	0.58
Transmembrane Helix	302	328	0.66
Non-Cytoplasmic	329	335	0.63
Transmembrane Helix	336	359	0.87
Cytoplasmic	360	535	0.74