YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-68
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASESSHDDP KYEAQEADAM RKLAFFGIAI STVATLTAIM AVPMLYNYMQ HVQSALQSEV  60
   61 DFCRHRTNGL WDEYNKFESV AGVRRRIKRA TYQKSNGVTG RLAHRRRAVA RGASSYDGGF 120
  121 NEEVPVGGGG GGGACCSCGV GPPGPSGAPG TDGNPGNDGS PGNPGTPGQD AVGDESPTAA 180
  181 DFCFDCPTGP PGPPGKQGPK GPNGEPGAPG TPGGNALPGP PGPPGPQGPP GADGLPGNPG 240
  241 APGVPGQVIE VPGTPGPAGP PGPPGPIGPP GQPGAPGSSQ PGPQGPPGDP GIDGAPGNPG 300
  301 SPGEPGPPGQ PGAGGGCDHC PPPRTAPGY

Type	Start	End	Confidence
Cytoplasmic	1	23	0.94
Transmembrane Helix	24	46	0.92
Non-Cytoplasmic	47	329	0.97