YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE08887
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.94
Transmembrane Helix	31	52	0.88
Non-Cytoplasmic	53	62	0.71
Transmembrane Helix	63	82	0.96
Cytoplasmic	83	94	0.80
Transmembrane Helix	95	116	0.86
Non-Cytoplasmic	117	164	0.81
Transmembrane Helix	165	182	0.94
Cytoplasmic	183	190	0.67
Transmembrane Helix	191	210	0.94
Non-Cytoplasmic	211	229	0.75
Transmembrane Helix	230	249	0.91
Cytoplasmic	250	267	0.71
Transmembrane Helix	268	292	0.84
Non-Cytoplasmic	293	313	0.78
Transmembrane Helix	314	343	0.76
Cytoplasmic	344	363	0.72
Transmembrane Helix	364	385	0.86
Non-Cytoplasmic	386	390	0.51
Transmembrane Helix	391	412	0.76
Cytoplasmic	413	447	0.59
Transmembrane Helix	448	470	0.87
Non-Cytoplasmic	471	475	0.45
Transmembrane Helix	476	499	0.87
Cytoplasmic	500	508	0.51
Transmembrane Helix	509	531	0.80
Non-Cytoplasmic	532	532	0.40
Transmembrane Helix	533	556	0.73
Cytoplasmic	557	589	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCFSALRERV FRLKNLPAGE IATPLRRCLS TFDITLLGVG HMIGAGIYVL TGSVVRNTAG  60
   61 PSIILSFLLA GFASLLSALC YAEFGARFPK AGSAYTYTYV GVGELWAFVI GWNIILEHML 120
  121 GAAAVARSWS GYLDSLLGNV ISNSTIARTG HLHEASSFFG DYPDLLAFLL IVLVAFFVAL 180
  181 GSKVSTNFNS FLTILNIGIV VIVVFYGITF ADFSLWSGVD EKGNSRFFPY GVSGMFAGAA 240
  241 SCFFAYIGFD GLATAGEEAK DPARSIPIAT FSSMTIVTLS YVLMSASLTL MIPYNMVHPT 300
  301 AAFSDAFTMR GAEFASYAVS VGALFGMTTS LVGGMFALPR CVFSMADDGL LFSSLASVNP 360
  361 KTQVPTQALL IFGFLTAIIA LLFDITTLVE FLSIGTLLAY SIVSACVIVL RYQPAYNVDE 420
  421 GQFDNGGKLR FSIPFCGFLD KLQPGHSIYY GMSVMIASMF FSGLGFSSGY LYGTVLCQIF 480
  481 LLVNIALIIL SFLFICAHYP NNTPLDFKVP LVPLIPALSL LINTLMMVHL AWITWLRLVV 540
  541 WMSIGFVIYF GYGIHHSKEE VQDAEKFSKS STYESVVSGV VAGAGTTSP