YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	twk-37
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTHTDRLIN KFIKRQMEKS SPETQHLVRK QSILKFVERK SRAERPKPTK LRTILRKIRK  60
   61 FNTIIAFVVL VAYIIGGALL FWQIESRSDM NINEFKRNIR QKSIHIYNSM KGSKCGKLKK 120
  121 ADNELNNNCI KEIFDLLYAS NPPKHIEEFL DGLAYVITCI TTIGYGELVC HTIAGKLVTV 180
  181 AYGIIGIALT LYVLRNNGKI TLKICNLTLK IFAICVRKCG KKSAKYKMTV LKAFILLVTF 240
  241 WGFGALAIAV YEEFVFYDAL YFSFSTFSTI GFGDFVPSGH ISGTIICVLH FIDLSLISMV 300
  301 LVLVHHSMEN RFMRVLELFD ERHATDTLET NMISPGASQR KLAATTTAKE

Type	Start	End	Confidence
Cytoplasmic	1	60	0.98
Transmembrane Helix	61	82	0.94
Non-Cytoplasmic	83	172	0.95
Transmembrane Helix	173	194	0.91
Cytoplasmic	195	229	0.93
Transmembrane Helix	230	251	0.92
Non-Cytoplasmic	252	280	0.77
Transmembrane Helix	281	304	0.90
Cytoplasmic	305	350	0.79