YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7497498
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	246	0.99
Transmembrane Helix	247	267	0.91
Non-Cytoplasmic	268	282	0.81
Transmembrane Helix	283	302	0.89
Cytoplasmic	303	308	0.67
Transmembrane Helix	309	325	0.96
Non-Cytoplasmic	326	332	0.75
Transmembrane Helix	333	355	0.90
Cytoplasmic	356	379	0.94
Transmembrane Helix	380	403	0.87
Non-Cytoplasmic	404	451	0.95
Transmembrane Helix	452	474	0.93
Cytoplasmic	475	493	0.94
Transmembrane Helix	494	516	0.78
Non-Cytoplasmic	517	535	0.73
Transmembrane Helix	536	558	0.89
Cytoplasmic	559	568	0.75
Transmembrane Helix	569	589	0.93
Non-Cytoplasmic	590	595	0.84
Transmembrane Helix	596	622	0.73
Cytoplasmic	623	634	0.79
Transmembrane Helix	635	653	0.81
Non-Cytoplasmic	654	656	0.69
Transmembrane Helix	657	679	0.86
Cytoplasmic	680	708	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFQKMGDSN TWDLVGEQQQ RKKSRSPSRA SRVDSELLVG VENAAELEAL GLGKEQLEEE  60
   61 ARRHKKQRSK SPALENIRKT SIHLLQKFGA IPKKKDDSVL LFRFHDIPDI PLESLCIRPK 120
  121 EFFEEPKVFS FRDMGREQQK AEVNEKCSYL FRGTSFDHDD HFELPTETGR VPEYDHFCPI 180
  181 HGSRRRLPRN KLVTMQTLMH SVDDEDNEDL AYIYGHDFLA KLVRKKKREM MSGTEKERAN 240
  241 KIKRKIMSNL WILSVAFLFL FTAFNGLQNL QTSVNGDLGS DSLVALYLSL AISSLFVPSF 300
  301 MINRLGCKLT FLIAIFVYFL YIVINLRPTY SSMIPASIFC GIAASCIWGA KCAYITEMGI 360
  361 RYASLNFETF QAFNQAKFRF FGYFFMIVHC GQVVGNMVSS YIFTLSYSQA LRGPEDSIYD 420
  421 SCGYQFPKNL SDLTELAESN LARPPQKVYV AVCLAYLACV IISGMIMSMF LNALAKDARN 480
  481 RKMAQKFNSE IFYLMLKHLI NIKFMLLVPL TIFNGLEQAF LVGVYTKAFV GCGLGIWQIG 540
  541 FVMACFGISD AVCSLVFGPL IKLFGRMPLF VFGAVVNLLM IVTLMVWPLN AADTQIFYVV 600
  601 AAMWGMADGV WNTQINGFWV ALVGRQSLQF AFTKYRFWES LGIAIGFALI RHVTVEIYLL 660
  661 ITFFMLLLGM CGFLAIENFD HIIKFWHHLI HTSCPEKEPL DDRNSDFE