YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-14
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDEKEKRSL RPVAFVAVVF STVAITSCLI TFPLILHYIQ TLESQVQLDL EFCQARARDM  60
   61 WKEMLDIETG GKKDSAKLAN IVLNHRRLEK RDTLQDFWAR RLHDQELRDQ PVGYDNPSVG 120
  121 VESFNSEGGG CCTCHRGPPG PAGDGGRDGA DGVDGTPGEI GPPGPPAPPG PDPHSLFPPQ 180
  181 CPCEAPPGDG GPPGQPGPDG PPGAPGNAGE DGKPGDQGPR GPPGIPGAPG QPGRPGPPGE 240
  241 PGTYKTEVGP AGRAGAPGRP GPPGQPGPAG PPGENGKGGG QGPSGLPGPP GQPGQNGAPG 300
  301 EVGQPGDNGA PGSCDHCPPA RLAPGY

Type	Start	End	Confidence
Cytoplasmic	1	12	0.96
Transmembrane Helix	13	37	0.91
Non-Cytoplasmic	38	326	0.99