YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srbc-19
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTEQPKMNI SAVTISIFGV VSSVFSCAMN FYFLVKTERK KKDMALFYFR FSVDVLQGSI  60
   61 VCVYLLFVIA YSLIPEELRK YHNLIFYLGF PSSNVDATRS MVSLAISMER VAAAYIPIFF 120
  121 HNYRKRFPAV IIFMIAVIYG LNEDIVLYVF CNFKLNIPKN CAALGCAMNT CFFHYWTHQK 180
  181 SVTFTITFVC LLLLCAKLFI FNELGRNGRK ELSRVNRLAL IDSTIVCVFD FVPNFIANQF 240
  241 AHKQFFSFQN IGPYIVVTKL AGCAIEACFV FWTFNRKTFK IKAQPKSRLP CQLGNFTNTD 300
  301 S

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.82
Transmembrane Helix	12	34	0.93
Cytoplasmic	35	52	0.72
Transmembrane Helix	53	74	0.87
Non-Cytoplasmic	75	96	0.73
Transmembrane Helix	97	119	0.53
Cytoplasmic	120	126	0.61
Transmembrane Helix	127	148	0.83
Non-Cytoplasmic	149	181	0.75
Transmembrane Helix	182	201	0.96
Cytoplasmic	202	217	0.89
Transmembrane Helix	218	237	0.92
Non-Cytoplasmic	238	254	0.82
Transmembrane Helix	255	274	0.93
Cytoplasmic	275	301	0.95