YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE08647
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.91
Transmembrane Helix	13	33	0.89
Non-Cytoplasmic	34	82	0.94
Transmembrane Helix	83	104	0.85
Cytoplasmic	105	112	0.79
Transmembrane Helix	113	132	0.94
Non-Cytoplasmic	133	138	0.83
Transmembrane Helix	139	161	0.89
Cytoplasmic	162	171	0.74
Transmembrane Helix	172	194	0.84
Non-Cytoplasmic	195	205	0.80
Transmembrane Helix	206	225	0.97
Cytoplasmic	226	263	0.96
Transmembrane Helix	264	283	0.80
Non-Cytoplasmic	284	308	0.74
Transmembrane Helix	309	331	0.83
Cytoplasmic	332	347	0.82
Transmembrane Helix	348	367	0.93
Non-Cytoplasmic	368	373	0.79
Transmembrane Helix	374	395	0.93
Cytoplasmic	396	403	0.78
Transmembrane Helix	404	426	0.84
Non-Cytoplasmic	427	440	0.81
Transmembrane Helix	441	461	0.94
Cytoplasmic	462	493	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGATTKPRL VPSTRFALSL VMFFGCLVTY MMRTNMSFAV VCMVNENKTD TGVEKVSRCG  60
   61 KEMTPVESNS SVIGEFDWDK QTTGMVLSSF FYGYIGSQII GGHLASRYGG KRVVFVTILG 120
  121 SALLTLLNPV AARTSEYALA ILRAAIGFLQ GATFPAMHTM WSVWGPPLEL SVLTGVTYAG 180
  181 AQIGNVIVLP LSGFLCEYGF DGGWPSIFYI IGVFGVLWTA VWWYVSSDKP ATHPRITPEE 240
  241 KQYIVTAVEA SMGKDTGKVP STPWIKILTS PAVWACWAGH FAGDWGAYTM LVSLPSFLKD 300
  301 VLGLNLSSLG AVASIPYIAY FLAINAGGVL ADTLRSKGIL STLNTRRAAM LVALIGQGIF 360
  361 LVASGYCGCG QDVLVIIFIT CGMAISGLQY AGFVVNYLEI APPFSGTVMG TGNTISALAG 420
  421 IISPAVSSYL TPNGTQEEWQ MVLWLTAGIL TIGALLFSIF ASGEVQPWAK LTAEEGHEMA 480
  481 PLREGEKIEL ATA