YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE08627
Protein type:	Transmembrane
Type Confidence:	0.61
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQKTDFLSK IFSSSSHPLT GSQNIVVKDP QTLDFAMQSQ NEIVCSLRER SHMNTMSYAQ  60
   61 TQMMAIDEIR AFQSEGHLHL KYISLIIAMM AETAVVTSRS WFPYFSCPSK SQRLAEAEGR 120
  121 ILSALGIKYL ARLIQIPFKN TEISTITVNC ESEQPIVKAK YPIVLIHGFG AGVALWGSAI 180
  181 KRLAQFQTVH AFDLPGFGRS SRPKFSSDPE TAETEMIDSI EQWRDKMNLE KMNLVGHSFG 240
  241 GYLATSYALK YPKRVENLIL ADPWGFNEMD PEFAQKLTSR QKNIFWVIQQ FNPLAVLRLV 300
  301 GGYGPSLVRR LRPDLALKYS EDVYDYIYLA NSRDPTGEEV FKCLSENLGW AKQPMSKRFH 360
  361 ELDNTVPVTF IHGERSWIDW RTTRRLFGEL EHVESHIMDS AGHHVYADDA DKFVQLVIGS 420
  421 LKDGKTGELV PEEVNLEEEI VTPI

Type	Start	End	Confidence
Cytoplasmic	1	79	0.54
Transmembrane Helix	80	96	0.39
Non-Cytoplasmic	97	444	0.86