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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ech-1
Protein type: Globular with Signal Peptide
Type Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRVVHRSS SVFRTNLSFR LFSQSAFAVH STHRVEKQGD VAVMKIDLPN TTENVLNKAL  60
   61 FAEMNETLDR LQSDQSVKAI VVMSGKPNSF VAGADIQMFK AEKTAAGVSN LLREGQKQLL 120
  121 TIELSQKPIV AAIMGSCMGG GLEIALACHY RIAVNDKKTL LGLPEVTLGI MPGDGGTQRL 180
  181 PKLTTVQNVL DLTLTGKRIK ANKAMKIGIV DRVIQPLGDG ICTSTETTHK YLEEIAVQSA 240
  241 RELANGKLKI NRDKGFVHNA TQAVMTSKFV LDNVILKMAK NKLIKLTNGN YPAPLKILDV 300
  301 VRTAYLDPKN GYEAEAKAFG ELSQTFQSKA LFGLFEGSTN AKKNKYGKGL PVNEIAVVGA 360
  361 GFMGAGIANV TINKGIRTVL LDANQAGVER GQNHVATHLN RQLKRQKISK LEREKIYNHL 420
  421 VPTIDYSAMK NADVVIEAVF EDLPLKHKVI RQIENVVGPN TIIASNTSAL PIKDIAAASS 480
  481 RSDKVIGMHY FSPVEKMQLL EIITHDGTSK ETLATAAQLG LKQGKLVVVV KDCPGFFVVR 540
  541 CLSPMMSEIV RLLQEGVEPS ELDKLTTKFG FPVGAATLAD EAGLDVAEHV ARYLGTALGP 600
  601 RVHGGSVDLL SELVRAGHKG RKTSKGIFVY GDGAKGSKKV NQEAAKLFEK YKLTPIKSVS 660
  661 SPEDRQLRLV SRFVNEALLC LEEGVISSPS DGDIASVFGL GFPPFWGGPF RFVDLYGAGK 720
  721 LVAAMDRFAG VYESVQFEPC QLLRNHAKSG GQFYS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle