YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE08370
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIGADEKKP LLVQLDGQYY DIADFAPKHP GGAKVLNRLA GEEIGEFIRG EKRIMGVRHE  60
   61 HSEAAYNMLE RYNVNAIQKG DPLIESKSGM LFKVGSLGSE YWHWIHQPYD GTLRLFDSDV 120
  121 LESMTRTAWW VVPAVWMPIV ITFSILSVLS FSTSTDVYNS ILLWSAWFVI GVLTWTLTEY 180
  181 SLHRWVFHWK PSPDSPNQIL LHFLAHGLHH KTPMDGDRLV FPPVPATLIV GIFYLIYSNT 240
  241 FQWPVFCAFG AGKLFGYVTY DMVHYYLHHG SPRPRSNLHF RKVYHHNHHF KNFDVGFGIS 300
  301 TSLWDYVFHT LGMGPL

Type	Start	End	Confidence
Cytoplasmic	1	128	0.97
Transmembrane Helix	129	151	0.89
Non-Cytoplasmic	152	159	0.77
Transmembrane Helix	160	180	0.90
Cytoplasmic	181	218	0.90
Transmembrane Helix	219	237	0.91
Non-Cytoplasmic	238	244	0.72
Transmembrane Helix	245	267	0.71
Cytoplasmic	268	289	0.79
Transmembrane Helix	290	308	0.52
Non-Cytoplasmic	309	316	0.54